Plant MITE

SE2020250

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5452
Medicago truncatula
SE2020250
Mutator
M85
MtChr8:14650267-14650547
TTGTAAAAA
AAGAATTATGTTATTCTCCTAACA

Secondary structure and sequence

TSD TIR

5'

3'

TTGTAAA       A    A           CGTT      A            C   C       C    -             T  T TTAATCTCTGCGTGAGTTAACTCACGCATGGGTATTTTCATGTTTAACTCAT
       AAGAATT TGTT TTCTCCTAACA    TTGCTC TTCCCAACCAAA TTT GAAAATA CGTG AGTTAACTCATGC AG G                                                    
       ||||||| |||| |||||||||||    |||||| |||||||||||| ||| ||||||| |||| ||||||||||||| || |                                                     
       TTCTTAA ACGA AAGAGGGTTGT    AACGAG GAGGGTTGGTTT AAA CTTTTAT TGGG CGTACTCAATTGA GT C                                                    
AAAAATG       G    A           TTTC      C            A   A       -    A             -  A AACGGGCTCAATTGAGTACGACCCATATTGTGTGCGAACTCAATTTAGTGCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020250

TTGTAAAAAGAATTATGTTATTCTCCTAACACGTTTTGCTCATTCCCAACCAAACTTTCGAAAATACCGTGAGTTAACTCATGCTAGTGTTAATCTCTGCGTGAGTTAACTCACGCATGGGTATTTTCATGTTTAACTCATGCGTGATTTAACTCAAGCGTGTGTTATACCCAGCATGAGTTAACTCGGGCAACATGAGTTAACTCATGCAGGGTTATTTTCAAAAATTTGGTTGGGAGCGAGCAACTTTTGTTGGGAGAAAAGCAGAATTCTTGTAAAAA

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