SE2020252

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5454
  • Medicago truncatula
  • SE2020252
  • Mutator
  • M9
  • MtChr1:10160125-10160487
  • TGTTTTTTT
  • GGCTTAATTGCACTTTTGACCCCCTATTTTTTCAAAAGTTGCGATTTTGGCCCCCTAACTAATTAAAATACAAAACAGCCCCCTATATATTGGATCTTTGGCAGTTTTGGCCTCCAAGACCACTTTTGACTTAGTCTTCGCTGACGTGGCACCCACA

Secondary structure and sequence

TSD    TIR
5'



3' 
TGTTTTTTT                  A                             G             T               C       A                                                C                     ATG   GACACATGGC
         GGCTTAATTGCACTTTTG CCCCCTATTTTTTCAAAAGTTGCGATTTT GCCCCCTAACTAA TAAAATACAAAACAG CCCCTAT TATTGGATCTTTGGCAGTTTTGGCCTCCAAGACCACTTTTGACTTAGT TTCGCTGACGTGGCACCCACA   GTC          
         |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   |||           
         CCGAATTAACGTGAAAAC GGGGGATAGAAAAGTTTTCAACGCTAAAA CGGGGGATTGATT ATTTTATGTTTTGTC GGGGATA ATAACCTAGAAACCGTCAAAACCGGGGGTTCTGGTGAAAACTGAATCA AAGCGATTGCACCGTGGGTGT   GGA          
TTTTTTGTT                  C                             A             C               A       C                                                A                     -AG   ATTCACTCCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3