Plant MITE

SE2020253

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5455
Medicago truncatula
SE2020253
Mutator
M25
MtChr2:11761977-11762172
TTTTTATAT
GAGAAATGCTAGCAACAC

Secondary structure and sequence

TSD TIR

5'

3'

TTTTTATAT   A              ATATTCTAACAT                          CA           A    AAC           ATA  GGA
         GAG AATGCTAGCAACAC            ACACTTTTCAACGCATTCTCTTTGAT  GTTAAAATTCA ATGA   CCACCAAATTT   TG   
         ||| ||||||||||||||            ||||||||||||||||||||||||||  ||||||||||| ||||   |||||||||||   ||   C
         CTC TTACGATCGTTGTG            TGTGAAAGGTTGTGTGAGAGAAATTA  CAATTTTAAGT TACT   GGTGGTTTAAA   AC   
TATATTTTT   C              ------------                          AC           G    CAA           ---  AGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020253

TTTTTATATGAGAAATGCTAGCAACACATATTCTAACATACACTTTTCAACGCATTCTCTTTGATCAGTTAAAATTCAAATGAAACCCACCAAATTTATATGGGACCGACAAAATTTGGTGGAACTCATGTGAATTTTAACCAATTAAAGAGAGTGTGTTGGAAAGTGTGTGTTGCTAGCATTCCTCTTTTTATAT

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