SE2020261

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5463
  • Medicago truncatula
  • SE2020261
  • Mutator
  • M4
  • MtChr3:43886008-43886320
  • ATTATTGTA
  • GGGTTAATAGGTCTTTACCCCCCTGTAATATAGGTCATTTTCGATTTTCCCTCCTGTAAAATATTTTTTTTTATTTACCCCCCTGTAATTTTTTTTTGTTTTGATTTACCCCCCTAATAGGCCAAACAAAAACGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTATTGTA                      C                    A       T              T    T          C              -                C                      AAATTCTTGAAA
         GGGTTAATAGGTCTTTACCCCC TGTAATATAGGTCATTTTCG TTTTCCC CCTGTAAAATATTT TTTT ATTTACCCCC TGTAATTTTTTTTT GTTTTGATTTACCCCC TAATAGGCCAAACAAAAACGAA            
         |||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| |||| |||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||            A
         CCCAATTATCCAGAAATGGGGG ACATTATATCCAGTAAAGGC AAAAGGG GGACATTTTATAAA AAAA TAAATGGGGG ATATTAAAAAAAAA CAAAACTAAATGGGGG ATTATCCGGTTTGTTTTTGCTT            
ATGTTATTA                      A                    C       -              T    C          -              A                -                      AAAATAAAATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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