SE2050275

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5477
  • Medicago truncatula
  • SE2050275
  • PIF/harbinger
  • To4
  • MtChr7:18088512-18088717
  • TAA
  • AGGTCCCGTTTAAATTGAGTTTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   TC C    AA           ---TTTG        C   C   T   C      -ATCA           CTTACTAACAA   TTATATTATCTTTAT
  AGG  C GTTT  ATTGAGTTTAT       AGCTTATG AAA AAA AAG TTTTAT     ATTCATAAGTT           ATA               
  |||  | ||||  |||||||||||       |||||||| ||| ||| ||| ||||||     |||||||||||           |||                
  TCC  G CAAA  TAACTCAAATA       TTGAATAC TTT TTT TTC AAAATA     TAAGTATTCGA           AAA               
AA   TA A    CC           CATTTTG        T   T   T   A      AATAA           ACAATTCCATC   TATTTTTTTATTGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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