SE2020283

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5485
  • Medicago truncatula
  • SE2020283
  • Mutator
  • M4
  • MtChr5:10843246-10843529
  • TAAATTATA
  • AATTATAGGGTTAATAGGTCTTTACCCCCTGTAATATAGGTCATTTCCGGTTTTCCCCCTGTAAAATATTTTTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
 TA    A                         --       A               T          AAT         GAT    CCCCCTGTAATTATTTTTTGTTTTGATTTACCCCCCTAATAGGTCAAACAAAAACGAAA
   AATT TAGGGTTAATAGGTCTTTACCCCCT  GTAATAT GGTCATTTCCGGTTT CCCCCTGTAA   ATTTTTTTT   TTAC                                                           
   |||| |||||||||||||||||||||||||  ||||||| ||||||||||||||| ||||||||||   |||||||||   ||||                                                           A
   TTAA ATCCCAATTATCCAGAAATGGGGGG  CATTATA CCGGTAAAGGCTAAA GGGGGACATT   TAAAAAAAA   AAAA                                                           
ATA    -                         GA       G               -          ---         ---    AACAAAACCAAATGGGGGATTATCCGGTTTGTTTTTGGTTAAAAAAAAAAAAATTCTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3