SE2020287

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5489
  • Medicago truncatula
  • SE2020287
  • Mutator
  • M16
  • MtChr5:36050466-36050667
  • AAAAAGAAA
  • GGGAAATGTTAAGTTGTGCCCTGAGGGCACAAGTTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAAAGAAA   AAA      G         G        A     -TGTA     TATAG     G   A       -G        GC     ATCTTTA
         GGG   TGTTAA TTGTGCCCT AGGGCACA GTTAA     TCAAA     AAATA TTT TTGGAGT  TGTGCATT  ATTTA       
         |||   |||||| ||||||||| |||||||| |||||     |||||     ||||| ||| |||||||  ||||||||  |||||       A
         CCC   ACAATT AACACGGGA TTCTGTGT CAATT     GGTTT     TTTAT AAG GATTTTA  ACACGTAA  TAAAT       
AAAGAAAAA   ATC      G         A        A     CTTTA     TCTTA     -   A       AA        GT     AATTTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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