SE2030288

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5490
  • Medicago truncatula
  • SE2030288
  • hAT
  • Hat7
  • MtChr1:26640054-26640479
  • ATAAATAA
  • ATGG

Secondary structure and sequence

TSD    TIR
5'



3' 
ATAAATA    CAAA             C  A   A                 ACCAA     AAAATTAATAATAAATGAGTTGTTTTTTTGAAGAAAAATAATTATTTTCTATCATTGACAACTAAGATAATTAAATTTTATATATCAAAAGCTTCGACGAAATAAAAATTAATTTTTAAGAATTTTTATTACTCATAACAATGAATATTGATT
       ATGG    TTCTATGGTACAC CA TAA TTTGGGTGTATCGGTAC     GTCAT                                                                                                                                                         
       ||||    ||||||||||||| || ||| |||||||||||||||||     |||||                                                                                                                                                          
       TACC    AAGATACCATGTG GT GTT AAACTCACATGGCCATG     AGAAA                                                                                                                                                         
TAATAAA    CTTG             A  -   A                 -----     AAAGTTTTTTATATATTTAATTTCTAGTGAAATTACTTTATTTTTCCATAAACAGTTATAAATATAAAATCTTTTGTAGTAAAGTATTCTTTTTGGTAGTAAAGTAACAAATATTCCTAGTATAATGTTTTAAATGTAAAACAGTATTTTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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