SE2020289

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5491
  • Medicago truncatula
  • SE2020289
  • Mutator
  • M37
  • MtChr5:1689190-1689391
  • TTAAAAAAA
  • AAGGAAATGTTAACAAGTGTCCTTGGCGCACTTGTTAAGAAGTTTAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAAAAAA    -AAA    A  A           C     T      AA       AAATAAATTTTATCT          GTAT    CACATTGAAAGTTTAAAAAG
        AAGG    TGTT AC AGTGTCCTTGG GCACT GTTAAG  GTTTAAA               TGGAAATGAT    TCAA                    
        ||||    |||| || ||||||||||| ||||| ||||||  |||||||               ||||||||||    ||||                    T
        TTCC    ACAA TG TTACGGGAATC CGTGA CAATTC  TAAGTTT               ATCTTTATTA    ATGT                    
 AAAAAAA    CAGA    A  G           C     T      -C       -------------AT          ---A    TCAAAATACATCTATTTCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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