SE2020293

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5495
  • Medicago truncatula
  • SE2020293
  • Mutator
  • M92
  • MtChr7:3854474-3854967
  • TAAATGCAA
  • TGCAAGGCTTAAAAGCACTTTTCACCCCTTATGTTTCAAAAAGTTGCGATTTTGGCCCCCTTTAAAAAAAAATGGATATTTTGACCCCTTAACTTTTGGCCCTATTTTGATTAGCTGATTT

Secondary structure and sequence

TSD    TIR
5'



3'
TAAA    ---         A                                                       AA                                A                 TGATGGAGAT    A         A                    A                  G           T        G  A      AACTT      CCCCTA   AA   -    CTTAT
    TGCA   AGGCTTAAA GCACTTTTCACCCCTTATGTTTCAAAAAGTTGCGATTTTGGCCCCCTTTAAAAAA  ATGGATATTTTGACCCCTTAACTTTTGGCCCT TTTTGATTAGCTGATTT          TATG CAATTTCTC GTCTTTGATGGTGTAAACTG CATGGGGATAGAAGGATG TGATAAGTGGA TCCAAACT GC TGGTGT     TTGGCA      AAG  GGA TCCA     
    ||||   ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||          |||| ||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||| || ||||||     ||||||      |||  ||| ||||      
    ACGT   TCCGAATTT CGTGAAAAGTGGGGGATACAAAGTTTTTCAACGTTAAAACCGGGGGAAATTTTTT  TACCTATAAAACTGGGGGATTGAAAACCGGGA AAAACTAATCGACTAAA          ATAC GTTAAAGAG TAGAAACTACCACATTTGAC GTACCCCTATCTTCCTAC ACTATTCACCT AGGTTTGA CG ACCACA     GACCGT      TTC  CCT AGGT     
   A    AAA         A                                                       --                                G                 ----------    G         C                    C                  G           C        A  C      GGTTT      --ACTA   -A   C    TTGAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End