SE2020309

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5511
  • Medicago truncatula
  • SE2020309
  • Mutator
  • M18
  • MtChr5:41765292-41765499
  • AATTAATAA
  • ATTAATAAGAGGAATGCTAGCAACACTCTCTTTTGAGAACTCTCTCCAGCACTCACTCTTTTATTGGGTGAAATCAATGTAGGACCTACACTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
 A      AA                             A        C                                  - GA  TA       GAAA   A
  ATTAAT  GAGGAATGCTAGCAACACTCTCTTTTGAG ACTCTCTC AGCACTCACTCTTTTATTGGGTGAAATCAATGTA G  CC  CACTTTG    TGG 
  ||||||  ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |  ||  |||||||    ||| A
  TAATTA  CTCCTTACGATCGTTGTGAGAGAAAACTC TGAGAGAG TCGTGAGTGAGAAAATAATCCACTTTAGTTACAT C  GG  GTGAAAT    ACC 
AA      -A                             G        A                                  A AG  TG       --AC   C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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