Plant MITE

SE2020323

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5525
Medicago truncatula
SE2020323
Mutator
M96
MtChr4:41868070-41868257
TTTTTAAAG
TTTTAAAGGGTAATGTTAACCGGTGTCCGGAACACTTGTTAAGGAATC

Secondary structure and sequence

TSD TIR

5'

3'

T  TT       A        CG     --   AA  C   -          A       - AAATATTGCATTGGAACTTGTGTTGTCAACTCCTC
 TT  AAAGGGT ATGTTAAC  GTGTC  CGG  CA TTG TTAAGGAATC AATGTAA T                                   
 ||  ||||||| ||||||||  |||||  |||  || ||| |||||||||| ||||||| |                                   A
 AA  TTTCCCA TATAATTG  CACGG  GCC  GT AAC GATTCCTTGG ATTTTTT C                                   
A  TT       G        TA     AA   -C  -   T          -       T TTTAAAATTTTATTTTTATTGTGAAAAGTATGAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020323

TTTTTAAAGGGTAATGTTAACCGGTGTCCGGAACACTTGTTAAGGAATCAAATGTAATAAATATTGCATTGGAACTTGTGTTGTCAACTCCTCAAAAGTATGAAAAGTGTTATTTTTATTTTAAAATTTCTTTTTTTAGGTTCCTTAGTCAATGCCCGAAGGCACATGTTAATATGACCCTTTTTAAA

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