Plant MITE

SE2020324

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5526
Medicago truncatula
SE2020324
Mutator
M4
MtChr5:25503746-25504059
TTTTTTTTA
AGGGTTAAGAGGTCTTTACCCCTGTAATATAGGTCATTTCCGGTTTTCCCCCCTGTAAATTTTTTTTTTTTGATTTACCCCCTTGTA

Secondary structure and sequence

TSD TIR

5'

3'

TTTTTTTT        G            -                  CC      C           TTT          A        C     --AAATA                     -                   AAAAAATTCTTAAAA
        AGGGTTAA AGGTCTTTACCC CTGTAATATAGGTCATTT  GGTTTT CCCCCTGTAAA   TTTTTTTTTG TTTACCCC TTGTA       TTTTTGTTTTGATTTACCCCC TAATAGGCCAAACAAAAAC               
        |||||||| |||||||||||| ||||||||||||||||||  |||||| |||||||||||   |||||||||| |||||||| |||||       ||||||||||||||||||||| |||||||||||||||||||               A
        TCCCAATT TCCAGAAATGGG GACGTTATATCCAGTAAA  CCAAAA GGGGGACATTT   AAAAAAAAAT AAATGGGG GACAT       AAAAACAAAACTAAATGGGGG ATTATCCGGTTTGTTTTTG               
ATTTTTTT        A            A                  AA      A           TAT          -        A     AAAAAAA                     G                   GTTAAAATAAAATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020324

TTTTTTTTAGGGTTAAGAGGTCTTTACCCCTGTAATATAGGTCATTTCCGGTTTTCCCCCCTGTAAATTTTTTTTTTTTGATTTACCCCCTTGTAAAATATTTTTGTTTTGATTTACCCCCTAATAGGCCAAACAAAAACAAAAAATTCTTAAAAAAATAAAATAAAATTGGTTTTTGTTTGGCCTATTAGGGGGGTAAATCAAAACAAAAAAAAAAAATACAGAGGGGTAAATAAAAAAAAATATTTTACAGGGGGAAAAACCAAAAATGACCTATATTGCAGAGGGTAAAGACCTATTAACCCTTTTTTTTA

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