Plant MITE

SE2020329

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5531
Medicago truncatula
SE2020329
Mutator
M97
MtChr6:17792823-17793040
ATATATAAA
TATATAAAGAGAAATGCTAAGGACAAACTCTCAAACACACTCTTTCAACACACTCCAATAATA

Secondary structure and sequence

TSD TIR

5'

3'

 A      AA                                                       GGAAGC   C   -     A  ----      --  ATTT      CAT
  TATATA  GAGAAATGCTAAGGACAAACTCTCAAACACACTCTTTCAACACACTCCAATAATA      CAC TCA CCCCA TT    TTTAAT  AC    CAATTT   
  ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||| ||| ||||| ||    ||||||  ||    ||||||    
  ATATAT  CTCTTTACGATTCCTGTTTGAGAGTTTGTGTGAGAAAGTTGTGTGAGGTTATTGT      GTG AGT GGGGT GG    AAATTA  TG    GTTGGA   
AA      -A                                                       ACAACT   T   A     A  AAAC      AT  -GCT      TTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020329

ATATATAAAGAGAAATGCTAAGGACAAACTCTCAAACACACTCTTTCAACACACTCCAATAATAGGAAGCCACCTCACCCCAATTTTTAATACATTTCAATTTCATATTAGGTTGTCGGTTAATTAAACAAAGGATGGGGATGATGTGTCAACATGTTATTGGAGTGTGTTGAAAGAGTGTGTTTGAGAGTTTGTCCTTAGCATTTCTCATATATAAA

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