SE2030332

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5534
  • Medicago truncatula
  • SE2030332
  • hAT
  • Hat7
  • MtChr5:12964907-12965330
  • TATTAATT
  • ATTAATTAGGGAACTTCTACGGTACACCCG

Secondary structure and sequence

TSD    TIR
5'



3'
 T      T   GA C     C          TAAATTAA      CC     T  TACTTCAA     TA        --------CTATCA      TGAAATAAAAAGCTATTTGTTGATATTTATATTTTAGAAAATATCATTTCATAAGAAAAAAAACATCATTTCATTGTTTATAAAAATCATACTAATTTTTTTACATTTATTGTAAAAAATAA
  ATTAAT AGG  A TTCTA GGTACACCCG        GGTGTA  GGTAC CT        AAATT  TAAATTAA              TTTTTA                                                                                                                          
  |||||| |||  | ||||| ||||||||||        ||||||  ||||| ||        |||||  ||||||||              ||||||                                                                                                                           
  TAATTA TCC  T AAGAT CCATGTGGGT        TCACAT  CCATG GG        TTTAA  ATTTAATT              TAAAAA                                                                                                                          
AT      -   AT T     A          TTCTATAC      AA     T  --------     TA        ATCAATTTACACAA      ACTTCTCTTTTTAACAAAAGATAGTGGATATTAATATTATTAATTTAGAATAAATAGTTTTTGTAGCTGCTTTATTTTAAACTAAAAAGACTTAAAAATCATGAGCATTATCTCTTAAAACT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End