SE2020335

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5537
  • Medicago truncatula
  • SE2020335
  • Mutator
  • M28
  • MtChr5:12366763-12367196
  • TAAAAATTA
  • TTAGGCTTAATTGCACTTTTCCCCCCTATAGTTTGCCAATTGTGCGATTTTGCACCCCATAGTTTTAAACAAGCGATTTTGCCCCCTATAGTTTTCCCCCTTTCTGATTTTATGGTCCCCATGACATTTAGTGCTGATGTGTCTGTTTTTTTTTATCAATTAATGTGTGCCACGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAAA                                                                      A                                             CC                             TT                           TGT   TT   -  TTTTAAAAAAATAAAAAAATGTTAT
      TTAGGCTTAATTGCACTTTTCCCCCCTATAGTTTGCCAATTGTGCGATTTTGCACCCCATAGTTTTAAAC AGCGATTTTGCCCCCTATAGTTTTCCCCCTTTCTGATTTTATGGT  CCATGACATTTAGTGCTGATGTGTCTGTT  TTTTTATCAATTAATGTGTGCCACGTG   AAT  CAT TT                         
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||   |||  ||| ||                          
      AATCCGAATTAACGTGAAAAGGGGGGATATCAAACGGTTAACACGCTAAAACGTGGGGTATCAAAATTTG TCGCTAAAACGGGGGATATCAAAAGGGGGAAAGACTAAAATACCA  GGTACTGTAAATCACGACTACACAGACAG  AAAAATAGTTAATTACACACGGTGCAC   GGT  TGT AT                         
ATTAAA                                                                      C                                             -A                             --                           --T   --   T  CTTAAATCACGACTTTTAGATTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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