SE2030336

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5538
  • Medicago truncatula
  • SE2030336
  • hAT
  • Hat2
  • MtChr1:8756914-8757103
  • TTTAATGC
  • TTAATGCTATGAAGCACGGATACGGACACGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
 T    T C                GGA AC   CAC   ACACGACACGGACACCGACACGCCGACACAGCTAATTTTTTTAGAAAATCACAAAAT
  TTAA G TATGAAGCACGGATAC   C  GGA   CGG                                                         
  |||| | ||||||||||||||||   |  |||   |||                                                          
  AATT C ATACTTCGTGCCTGTG   G  CCT   TCC                                                         
GT    T -                -AG AA   -AT   GCACAGGGGCACAGTCTGTGCGCAGCACAGGCGGGGGCTGTGTATATTAATGTGACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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