SE2010338

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5540
  • Medicago truncatula
  • SE2010338
  • Tc1/Mariner
  • St11
  • MtChr3:16421833-16422095
  • TA
  • TACTCCCTCCGTTTCAAAATACATGTCCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
              C               GTCAAC    TCACATATGCCAATGCATAATTTTGACTGTTAATATCTTTAATTTTCTAAAGTAAAAAATTATAAAAATTTAATATTTTGAAAATATTTGTC
TACTCCCTCCGTTT AAAATACATGTCCAA      CACT                                                                                            
|||||||||||||| |||||||||||||||      ||||                                                                                            G
ATGAGGGAGGCAAA TTTTATGTACAGGTT      ACGT                                                                                            
              A               --AAAA    TACACGTGATAAGTGAACTGAATGAAACTGATATGAAAAATTGATTATATATTTATGTTTATAATTGTACATTCTACAACAAACTAAACAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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