Plant MITE

SE2020342

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5544
Medicago truncatula
SE2020342
Mutator
M11
MtChr5:8108971-8109161
TTTTTTTAT
GGGTCTTGTTAACGAGTGCCCCCGTGACACTCTTTAAGG

Secondary structure and sequence

TSD TIR

5'

3'

TTTTTTTAT   TCT       G          T AC   CT      -----------A   CAAAAGAAGAAATAATTTTATAAAAAAGTCAAATATTT
         GGG   TGTTAAC AGTGCCCCCG G  ACT  TTAAGG            TTC                                      
         |||   ||||||| |||||||||| |  |||  ||||||            |||                                      C
         CCT   ACAATTG TCACGGGGGC C  TGA  AATTCC            TTG                                      
TATTTTTTT   TTT       G          - CA   TC      AGAAATTTACCA   AATAGTACTTTTCAACATATTAGTTACGTAGCCTTTAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020342

TTTTTTTATGGGTCTTGTTAACGAGTGCCCCCGTGACACTCTTTAAGGATTCCAAAAGAAGAAATAATTTTATAAAAAAGTCAAATATTTCGATTTCCGATGCATTGATTATACAACTTTTCATGATAAGTTACCATTTAAAGACCTTAACTAGTACCCGGGGGCACTGGTTAACATTTTCCTTTTTTTAT

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