Plant MITE

SE2020351

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5553
Medicago truncatula
SE2020351
Mutator
M37
MtChr6:13569767-13569972
TTAAAGTAT
GGGAAATGCTAACAAATGCCCTT

Secondary structure and sequence

TSD TIR

5'

3'

TTAAAGTAT   AA          A       AGGTA    C   T        G      ---------------------------            ----------  TT  GAA   TG
         GGG  ATGCTAACAA TGCCCTT     AGGG ACT GTTAAGAA CTTAAA                           AGAGAAAGTTTA          TC  GG   TGA  
         |||  |||||||||| |||||||     |||| ||| |||||||| ||||||                           ||||||||||||          ||  ||   |||  T
         CCC  TACGATTGTT ATGGGAA     TCCC TGA CAATTCTT GAGTTT                           TCTTTTTCAAGT          AG  CC   ACT  
TATGAAATT   AA          C       -----    A   T        -      TTATCTTTACTTAATATTTAAACTACA            AAAATTTCAA  TT  ACA   TA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020351

TTAAAGTATGGGAAATGCTAACAAATGCCCTTAGGTAAGGGCACTTGTTAAGAAGCTTAAAAGAGAAAGTTTATCTTGGGAATGATGTATTCAACACCTTGAAACTTTAAAATGAACTTTTTCTACATCAAATTTATAATTCATTTCTATTTTTGAGTTCTTAACTAGTACCCTAAGGGTACTTGTTAGCATAACCCTTAAAGTAT

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