Plant MITE

SE2020353

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5555
Medicago truncatula
SE2020353
Mutator
M98
MtChr2:26310661-26310857
ATCGATTTA
ATCGAT

Secondary structure and sequence

TSD TIR

5'

3'

          TTAC  A  A                                       -A           A     A   T  AAAACAACAAAAAAA    GT
    ATCGAT    GG TA TACTTGGGTGACATTGTGGTTGGTGACATTGGTGACATT  CCAACCACAAT TTACA GTG GC               TCTT  
    ||||||    || || |||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||| ||| ||               ||||   
    TAGCTA    CC AT GTGAACCCACTGTAACACCAACCACTGTAACCACTGTAA  GGTTGGTGTTA AGTGT CAC CG               AGAA  
CATT      ----  -  C                                       CC           C     A   -  ----AAAGAAGAAAA    AG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020353

ATCGATTTACGGATAATACTTGGGTGACATTGTGGTTGGTGACATTGGTGACATTACCAACCACAATATTACAAGTGTGCAAAACAACAAAAAAATCTTGTGAAAGAAAAAGAAGAAAGCCACATGTGACATTGTGGTTGGCCAATGTCACCAATGTCACCAACCACAATGTCACCCAAGTGCTACCATCGATTTAC

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