SE2030362

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5564
  • Medicago truncatula
  • SE2030362
  • hAT
  • Hat30
  • MtChr5:19473491-19474182
  • CTCTCCAT
  • CTATGAAGCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
CTCTCCAT           TGA      -  CGGGTGTGGATATGATACGATACGGGTACGTAGATACGCGAATTTTTTAAAATTTAGGATACGATACGGTTATGATACGTTAACAAAAATTTATAGTAAAACTTATATGTATGTAAAATACTTGAAGAAAATTAACACCGATTACTCTTCATTATTGTATTATTAAAAAAGTTACAATTTTTTTAAATATAATACATGTGATCAAAATACTTTTTTTTGTAAGTTTTCTTATAAATTATATTACATTTTCATATGTTGGGATATCGAAAGAAACATCATTAAAAAAACTCAACACAAATTTTATCTAATGTTGATTA
        CTATGAAGCCT   TACGGA TA                                                                                                                                                                                                                                                                                                                             
        |||||||||||   |||||| ||                                                                                                                                                                                                                                                                                                                              
        GATACTTCGGA   CCTATG GG                                                                                                                                                                                                                                                                                                                             
TACCTCTC           ---      A  TTTTACCTCTGCATGGGCATAGCCTATGGCTATGAAGTGCCTATGAGCGCCTATACATGGATGCTTCATAACTTTAATTAATAAAATTAAAAATTATTTATAAAATAGCCTATGAATACACTATGAGGTGTATATGTGTTCCTATGAAGATTCTATGAAGTGTCTATGCATAGGATCTTTTTCTATTTCTCATTTTTTCACTCTGTACATTTTTAAGTAATATCTACATATACTATACGTAGTTATATTAACAAAGAGCTACTTTGTGGATTTTAATATGAAGAACACCTACTTGCATTGCTCTCTACACTAAGTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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