Plant MITE

SE2020364

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5566
Medicago truncatula
SE2020364
Mutator
M99
MtChr5:5517158-5517349
GTCAACCAT
ATGAAAATTGTTGTATACACATCCAATAGGGCTGAAACACACCAGTAAAATATCAAAATATCCCTTCGACAGTTAACTACCGTCGA

Secondary structure and sequence

TSD TIR

5'

3'

GTCAACC      A                C                  C          C                        AC   C  TTG
       ATGAAA TTGTTGTATACACATC AATAGGGCTGAAACACAC AGTAAAATAT AAAATATCCCTTCGACAGTTAACT  CGT GA   
       |||||| |||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||  ||| ||    
       TGCTTT AACAACATATGTGTAG TTATCCCGATTTTGTGTG TCATTTTATG TTTTATAGGGAAGCTGTCAATTGA  GCG CT   
AACCAAC      A                A                  A          A                        CA   C  TCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020364

GTCAACCATGAAAATTGTTGTATACACATCCAATAGGGCTGAAACACACCAGTAAAATATCAAAATATCCCTTCGACAGTTAACTACCGTCGATTGACTTCCGCGACAGTTAACTGTCGAAGGGATATTTTAGTATTTTACTAGTGTGTTTTAGCCCTATTAGATGTGTATACAACAAATTTCGTCAACCAA

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