Plant MITE

SE2020365

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5567
Medicago truncatula
SE2020365
Mutator
M85
MtChr4:2470748-2470958
CTAAAATTA
AAATTAGAATTTTGCTTTTCTCCCATAAAAAATTACTCGCACTCAACCAAACTTCCAAAAATACCCCTGCGTACTTAAGTCAC

Secondary structure and sequence

TSD TIR

5'

3'

CTA     --A                            A     A             CCA       C C     -           ------  AG  TTTTATAACCG
   AAATT   GAATTTTGCTTTTCTCCCATAAAAAATT CTCGC CTCAACCAAACTT   AAAATAC C TGCGT ACTTAAGTCAC      GC  GG           
   |||||   |||||||||||||||||||||||||||| ||||| |||||||||||||   ||||||| | ||||| |||||||||||      ||  ||            
   TTTAA   CTTAAGACGAGAAGAGGGTATTTTTTAA GAGCG GGGTTGGTTTGAA   TTTTATG G ACGCA TGAATTCAGTG      AC  TC           
  A     ATC                            C     A             AAC       A T     C           TAATGC  --  AATTGAGTATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020365

CTAAAATTAGAATTTTGCTTTTCTCCCATAAAAAATTACTCGCACTCAACCAAACTTCCAAAAATACCCCTGCGTACTTAAGTCACGCAGGGTTTTATAACCGGTATGAGTTAACTCACGTAATGTGACTTAAGTCACGCATGAGTATTTTCAAAAGTTTGGTTGGGAGCGAGCAATTTTTTATGGGAGAAGAGCAGAATTCCTAAATTTA

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