SE2020367

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5569
  • Medicago truncatula
  • SE2020367
  • Mutator
  • M80
  • MtChr8:3903005-3903398
  • AAAAAAGAA
  • GGTTAAATTACATTAAGGGTCCTTTAAGTTTGAGGTTTGAAACAAATTGGTCCTTTAAGTTATTTTTGTAACAGATAAGTCCTTTAAGTTTGAGGTTTGTAACTGATTGGTCATTTAAGTAATTTTTGTCACACATAAGTCTTTTTAAGTTGTAAATGTTTTCAATTTAGTACTTCTATTAACCA

Secondary structure and sequence

TSD    TIR
5'



3'
AAAAAAGAA          C    AGG                     A           C                 A   G      C                      T       CA       A   TTT                  T     G                   A     A   -AC  AAA
         GGTTAAATTA ATTA   GTCCTTTAAGTTTGAGGTTTG AACAAATTGGT CTTTAAGTTATTTTTGT ACA ATAAGT CTTTAAGTTTGAGGTTTGTAAC GATTGGT  TTTAAGT ATT   GTCACACATAAGTCTTTT AAGTT TAAATGTTTTCAATTTAGT CTTCT TTA   CA   
         |||||||||| ||||   ||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| |||||| |||||||||||||||||||||| |||||||  ||||||| |||   |||||||||||||||||| ||||| ||||||||||||||||||| ||||| |||   ||    
         CCAATTTAAT TGAT   CAGGAAATTCAAACTCCAAAC TTGTTTAACCA GAAATTCAATAAAAACA TGT TATTCA GAAATTCAAACTCTAAACATTG CTAACCA  AAATTCA TAA   CAGTGTGTATTCAGGAAA TTCAA ATTTGCAAAAGTTAAATCA GAAGA AGT   GT   
AAGAAAAAA          A    ATA                     A           A                 G   G      A                      T       TG       A   CAC                  -     A                   G     C   GTA  AGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End