SE2020368

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5570
  • Medicago truncatula
  • SE2020368
  • Mutator
  • M1
  • MtChr7:8008348-8008782
  • TTTATTTTA
  • AGGTCAAATGCATCTAAAGGTCCTTTAAGTTTTTTGTTTTTCCCAAAGTGGTCCTTTAAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTATTTT                                           C                         -   CAAACAAGTCCTTTTAGTTTTTGAATCGTTTCAAACAAGTCCTATTGTAGATAGCATAGTTGGTAATTGCTTCCTTGAACTCATCTTTGGTACCAAATCTGGCTCCTAACACCCACTTAAAATTAGTCATTTTTTTA
        AGGTCAAATGCATCTAAAGGTCCTTTAAGTTTTTTGTTTTTCC AAAGTGGTCCTTTAAGTTTCAAAAG TCC                                                                                                                                         
        ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||                                                                                                                                          
        TCCAGTTTACGTAGATTTCCAGGAAATTCAAAAAGCAAAAAGG TTTCACCAGGAAATTCAAAATTTTC GGG                                                                                                                                         
ATTTTATT                                           A                         A   TTTTTTCAGGAAATTCAAAGTTTTCAGGGTTTGTTCAGGAAAATCAAAAACTTAGCAAAGTTTGTTCAGGAAAATTTCCTACTACCACTACTAAGTCTACTATCGTTGTTTCTCGTAATGGGTGGTAAGCGGTACGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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