SE2020372

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5574
  • Medicago truncatula
  • SE2020372
  • Mutator
  • M101
  • MtChr7:15372908-15373270
  • TAATTTTAA
  • AGGGTAAATACCTCTTTTCGTCCCTGTAATATTAGCGAATTTCGATTTTAGTTTCTGTAAAAAAAAGATTTAGATTTTGTCCTTGTAATTTCATATTCTTCCACTTTTGTTCCCTCATTCCACCACGTAAGCAGAATCTGCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATTTTA          C                        C        A                     -                           T       C       T      A  C  C  C  A              ACA    A G AAAATGAGGGACCAAAAGTGGA
        AGGGTAAATA CTCTTTTCGTCCCTGTAATATTAG GAATTTCG TTTTAGTTTCTGTAAAAAAAA GATTTAGATTTTGTCCTTGTAATTTCA ATTCTTC ACTTTTG TCCCTC TT CA CA GT AGCAGAATCTGCAT   TGGT C T                      
        |||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||| |||||| || || || || ||||||||||||||   |||| | |                       
        TCCCATTTAT GAGAAAAGCAGGGATATTATAATC CTTAAGGT AAAATCAGGGACATTTTTTTT CTAAATCTAAAACAGGGACATTAAAGT TAAGAAG TGAAAAC AGGGAG AA GT GT CA TTGTCTTAGACGTA   TTTA A T                      
 ATTTTAA          A                        A        C                     T                           C       A       C      G  A  A  T  G              ---    - - GCAGGAACATTAAAGTCTAAGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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