Plant MITE

SE2050379

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5581
Medicago truncatula
SE2050379
PIF/harbinger
To4
MtChr8:16737020-16737227
TTA
GCCCGTTTGAATTGGCTTATTTTTGAGCTTATGCAAATAAATAAGCTTTTATGTATTATTCATAAGCTTGTCAAGGTAGTTTATGA

Secondary structure and sequence

TSD TIR

5'

3'

 TTA         A              --------------G                             ATT         --   -----GT     TAG       AATA
    GCCCGTTTG ATTGGCTTATTTTT               AGCTTATGCAAATAAATAAGCTTTTATGT   ATTCATAAG  CTT       CAAGG   TTTATGA    
    ||||||||| ||||||||||||||               |||||||||||||||||||||||||||||   |||||||||  |||       |||||   |||||||    A
    CGGGCAAAC TAACTGAATAAAAA               TCGAATACGTTTATTTATTCGAAAATACA   TAAGTATTC  GAA       GTTTT   AAGTATT    
ATTC         C              ATCGAATACTTTTTA                             -AT         AA   AGTGATT     TAG       CAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2050379

TTAGCCCGTTTGAATTGGCTTATTTTTGAGCTTATGCAAATAAATAAGCTTTTATGTATTATTCATAAGCTTGTCAAGGTAGTTTATGAAATAACAACTTATGAAGATTTTTGTTAGTGAAAGAACTTATGAATTAACATAAAAGCTTATTTATTTGCATAAGCTATTTTTCATAAGCTAAAAAATAAGTCAATCCAAACGGGCCTTA

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