SE2030381

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5583
  • Medicago truncatula
  • SE2030381
  • hAT
  • Hat31
  • MtChr5:14710697-14711063
  • GGCTAGGC
  • GGCTAGGCCAGTGGCGGATGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
 G    G            G  GGAATATTTTA  G        GAATTGTATGAA   TATATTAAACTGTGTGAAGGAAATATCATAACTGTTAACTGGTCCAGTGGTTTATTTTGCTTGATTGCAGAGTAGGAGATGCCGGTTCGTATCCACATACGAGCTTTTTTTTTGAACAAAATAGTAAAAAT
G CTAG CCAGTGGCGGAT TT           TG GGGTGCCG            ATA                                                                                                                                   
| |||| |||||||||||| ||           || ||||||||            |||                                                                                                                                    
C GATC GGTCACCGCTTA AA           AC TCCACGGT            ACC                                                                                                                                   
 G    G            G  -GTATCCCTGG  G        ------------   ATGGGGGTTGAAAAGGTGTATATAATCTAATCCGTATTAACATAGTGTTGATACGTCAACCGCGCCACCTTTACTACGAACAAAAAGAACGTATCCAGCGCTCAAACTGGGAAGGTAGGAGAAAGACAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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