SE2050384

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5586
  • Medicago truncatula
  • SE2050384
  • PIF/harbinger
  • To4
  • MtChr1:4227940-4228166
  • TAA
  • AGGGCCCGTTTGGATTGGCTTATTTTTTAGTTTATGAAAAGTAGCTTATGCAAATAAATAAACTTTTATATTAATTCATAAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA      C                          A  A          A             A      --     A          CTC   -- ACGAAAATAGTATCTTCATA
  AGGGCC GTTTGGATTGGCTTATTTTTTAGTTT TG AAAGTAGCTT TGCAAATAAATAA CTTTTA  TATTA TTCATAAGTT   ACT  A                    
  |||||| |||||||||||||||||||||||||| || |||||||||| ||||||||||||| ||||||  ||||| ||||||||||   |||  |                     
  TCCCGG CAAACCTAACCGAATAAAAAATCGAA AC TTTTATCGAA ACGTTTATTTATT GAAAAT  ATAAT AAGTATTCGA   AGT  C                    
AA      -                          A  G          C             C      AC     -          -AC   TC ATCAAATACTTTTTTGTTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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