Plant MITE

SE2020388

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5590
Medicago truncatula
SE2020388
Mutator
M103
MtChr4:24331332-24331522
TTTAAATTA
AGGG

Secondary structure and sequence

TSD TIR

5'

3'

TTTAAATT    TCTTA    --   T   C        C           TTCAAA  -    ---- AATATTGTTTAAAAAAGTCAAAAGTTACAAATT
        AGGG     TTAA  AGT GTC CCGAAGCA TCTTTAAGGAT      TT TTAA    A                                 
        ||||     ||||  ||| ||| |||||||| |||||||||||      || ||||    |                                 T
        TCCC     AATT  TCA CGG GGTTTTGT AGAAATTTTTG      GT ATTA    T                                 
ATTAAATT    TTTAC    GC   -   C        A           ------  A    TTAT CAAAAATACTTTTTGATACATTAATCACGTAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020388

TTTAAATTAGGGTCTTATTAAAGTTGTCCCCGAAGCACTCTTTAAGGATTTCAAATTTTAAAAATATTGTTTAAAAAAGTCAAAAGTTACAAATTTCAATGCACTAATTACATAGTTTTTCATAAAAACTTATTATTAATGGTTTTTAAAGAATGTTTTGGCGGCACTCGTTAACATTTCCCTTTAAATTA

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