SE2020401

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5603
  • Medicago truncatula
  • SE2020401
  • Mutator
  • M101
  • MtChr1:11802419-11802811
  • TTATAAAAG
  • TTATAAAAGGGTAAATACCTCTTTTCGTCCCTGTAATATTAGCGAATTCCGGTTTTAGTCCCTGTAAAAAAAAGATTTAGATTTTGTCCCTGTAATTTCAGATTCTTCCATTTTTGGTCCCTCCTTTCATCAAGTCATTAGAATCTGCATA

Secondary structure and sequence

TSD    TIR
5'



3'
        A                  G                                C C    -                                                     C   C        A    T             -----     CGTCATTGTAATTTCATATTCCTCCCACTTTTGGTCC
 TTATAAA GGGTAAATACCTCTTTTC TCCCTGTAATATTAGCGAATTCCGGTTTTAGT C TGTA AAAAAAAGATTTAGATTTTGTCCCTGTAATTTCAGATTCTTCCATTTTTGGTC CTC TTTCATCA GTCA TAGAATCTGCATA     AATTA                                     
 ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| |||||||||||||     |||||                                     C
 AATATTT CCCGTTTATGGAGAAAAG AGGGACATTATAATCGTTTAAGGCCAAAATCA G ACAT TTTTTTTCTAAATCTAAAACAGGGGCATTAAAGTCTAAGAAGGTGAAAACCAG GAG AAAGTGGT CAGT GTCTTAGACGTAT     GTGCG                                     
A       -                  G                                A A    A                                                     A   T        G    T             GTACC     TTTTACTCCTGGTTTGCACCTCATTATACTTTAATAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End