SE2020406

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5608
  • Medicago truncatula
  • SE2020406
  • Mutator
  • M86
  • MtChr3:38178635-38178830
  • ATTTAATAT
  • TTAATATGGCAAATGTTAACTTGTGCCCTCAAGGGCACATGTTAAGGAACTT

Secondary structure and sequence

TSD    TIR
5'



3'
 AT    T    --  A                 C     C                -TTTAT  A   A  C    -CA    T    -    CAACTTCTT
   TTAA ATGG  CA ATGTTAACTTGTGCCCT AAGGG ACATGTTAAGGAACTT      AG AAT TT GCAT   AAAG CGTG CATT         
   |||| ||||  || ||||||||||||||||| ||||| ||||||||||||||||      || ||| || ||||   |||| |||| ||||          
   AATT TACC  GT TACAATTGAACACGGGA TTCCC TGTACAATTCCTTGGG      TC TTG AA CGTA   TTTT GTAT GTAA         
TAT    -    CA  A                 -     A                TTTTTT  G   A  -    ACC    -    T    AATTTAAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End