Plant MITE

SE2020407

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5609
Medicago truncatula
SE2020407
Mutator
M87
MtChr8:8611803-8611994
TACTTTAAA
AGG

Secondary structure and sequence

TSD TIR

5'

3'

TACTTTAA   TTCT                         CT     C  GC     AA      GATTCTTTCAAAATT         TCAATT  CAAT
        AGG    TGTTAACTAGTGCCTCCGGGGCACT  TTAAG AT  TAAAT  AGTAAT               TAAAAGTTT      TC    
        |||    |||||||||||||||||||||||||  ||||| ||  |||||  ||||||               |||||||||      ||    G
        TCC    ACAATTGATCACGGGGGCCCCGTGA  AATTC TG  ATTTA  TCATTA               ATTTTCAAA      AG    
AAATTTCA   CTTT                         TC     C  GA     --      ---------AAAAAT         CACACT  TCAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020407

TACTTTAAAGGTTCTTGTTAACTAGTGCCTCCGGGGCACTCTTTAAGCATGCTAAATAAAGTAATGATTCTTTCAAAATTTAAAAGTTTTCAATTTCCAATGCACTGATCACACAAACTTTTATAAAAAATTACTATTTAAGGTCCTTAACTAGTGCCCCGGGGGCACTAGTTAACATTTCCCTACTTTAAA

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