SE2050410

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5612
  • Medicago truncatula
  • SE2050410
  • PIF/harbinger
  • To2
  • MtChr3:20949803-20950196
  • TAA
  • AGGCTTTGTTTGGGAGTTTGGAGGGAAGAGGAAGGGAGGGCTTTAGGGGTGAGAAATAGAGGA

Secondary structure and sequence

TSD    TIR
5'



3'
TA            G            -      AA       C   -------------      ------             -AAAAT   A         C  TTTTCTCAAAGAGTAATTTTTTAGAAAATGATAAACTAATGCTTATGATTCATATATTTTTAATATTAAAAATATTATAACAACATATATTAAATTTGAAG
  AGGCTTTGTTTG GAGTTTGGAGGG AAGAGG  GGGAGGG TTT             AGGGGT      GAGAAATAGAGGA      GAG AATTTTTCA AT                                                                                                     
  |||||||||||| |||||||||||| ||||||  ||||||| |||             ||||||      |||||||||||||      ||| ||||||||| ||                                                                                                     A
  TCCGAAACAAAC CTCAAATCTCCC TTCTCT  CCCTCCC AAA             TCCTCG      TTCTTTATCTCCT      CTC CCTCCCGAA AC                                                                                                     
AA            G            C      -C       A   CTCTTTTTTTCCT      TTCACC             GTAATC   C         -  TACCAATTAAAAAGAAGTATTATGTTTTGGGAGGAGTAAACCCTTTGAGTTTTCAACATAACGTCCTCCCAAAACTCCCCAAATCCTCCCAAATATACTTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End