SE2010411

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5613
  • Medicago truncatula
  • SE2010411
  • Tc1/Mariner
  • St21
  • MtChr1:27919803-27920127
  • TA
  • TACTCTCTCCGTCCTAATTTATAAGCAAAAAACACT

Secondary structure and sequence

TSD    TIR
5'



3' 
                 TT             CA  AA    CAC    TAAGAAAACTAACACTTAGTGATTTGAGGTATAAATTTTTGTGTTCTCCTTAGAATAAGTTTCATGGAAAGATGTAAAAATAATTCTCATTGGTTAAAAATTATGGAGAAAATAAA
TACTCTCTCCGTCCTAA  TATAAGCAAAAAA  CT  TTCA   TTAC                                                                                                                    
|||||||||||||||||  |||||||||||||  ||  ||||   ||||                                                                                                                     
ATGAGGGAGGCAGGATT  ATATTCGTTTTTT  GA  GTAT   AAGA                                                                                                                    
                 TT             TA  --    ---    AACAGAGTTTTATATTCGTTTTTTCTGGTTGAAAATACGATAATAATACAAAAAAGTTTGTTTAGTAGAAAAGGTTACATTTTAATTTACGTTTAACGTAAGTTAAACAAGAGGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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