SE2020418

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5620
  • Medicago truncatula
  • SE2020418
  • Mutator
  • M35
  • MtChr6:6430708-6431277
  • TAAAAAAAA
  • AGGCTTAATTACACTTTTGGTCCTTGCATTTTGACCAACTCACGAAATTAGTC

Secondary structure and sequence

TSD    TIR
5'



3'
TAAAAAAA           C            TG                     T     -ATACCTC                     C C                ----             A                              CAT        A                                                T                  C         AC      AAACCAAGAAAA           CAAA       T  GG
        AGGCTTAATTA ACTTTTGGTCCT  CATTTTGACCAACTCACGAAA TAGTC        TTTTAAATCGAACAAAATCGT C TAAACTATATGTTTTT    TGCAGTTTTAGTC TATCTCCCTATTTTCAACTCCAGAAACGCA   AAATGACA TTTTAGTCCAACCACCTATGCTCAACCATGAAATAAACAAGGAATAAA CATGTGGGTACAAGGAAT TACTTTGTT  GCACAC            AACCTAATTTC    ACATGTT CA  
        ||||||||||| ||||||||||||  ||||||||||||||||||||| |||||        ||||||||||||||||||||| | ||||||||||||||||    ||||||||||||| ||||||||||||||||||||||||||||||   |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||  ||||||            |||||||||||    ||||||| ||   
        TCCGAATTAAT TGAAAACCAGGA  GTAAAACTGGTTGAGTGCTTT ATCAG        AAAATTTAGCTTGTTTTAGCA G ATTTGATATACAAAAA    ACGTCAAAATCAG ATAGAGGGATAAAGGTTGAGGTCTTTGCGT   TTTACTGT AAAATCAGGTTGGTGGATACGAGTTGGTACTTTATTTGTTTCTTATTT GTACACCCATGTTCCTTA ATGAAATAA  TGTGTG            TTGGATTAAAG    TGTACAA GT  
AAAAAAAA           A            TG                     T     GATAAAAA                     A A                AAAA             G                              ATC        C                                                T                  T         GT      -----------A           ACTC       T  AT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End