SE2010420

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5622
  • Medicago truncatula
  • SE2010420
  • Tc1/Mariner
  • St31
  • MtChr5:33778244-33778394
  • TA
  • TACTCCCTCCGATCACATATATAAGCAACTTTTGCTTTTTTAGGTTCATTAAATCACTGATATATCTGGAATATAATATAGTCTAGATACATCACTTATTTAATGAATCTAAAAAAGTAAAAGTTGCTTATAAATGTGACCGGAGGAAGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
    C      A      A                                   CAC    A        A   A
TACT CCTCCG TCACAT TATAAGCAACTTTTGCTTTTTTAGGTTCATTAAAT   TGAT TATCTGGA TAT 
|||| |||||| |||||| |||||||||||||||||||||||||||||||||||   |||| |||||||| ||| A
ATGA GGAGGC AGTGTA ATATTCGTTGAAAATGAAAAAATCTAAGTAATTTA   ACTA ATAGATCT ATA 
    A      C      A                                   TTC    C        G   T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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