SE2020421

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5623
  • Medicago truncatula
  • SE2020421
  • Mutator
  • M82
  • MtChr1:15051444-15051846
  • TTATATTTA
  • ATATTTAGGGTTAAATAAGTTTTTCATCCTTATAAATATAACAAATTCTGATTTTAGTCCTTAAAAAATTAAACTGAATGTTTTCATCCTCACAAATTTTTTTTATTTTGTTTTTGATCCTTAATGA

Secondary structure and sequence

TSD    TIR
5'



3'
 TT    TT             T    CA              A    -TTC                     T   C   -                          TA           A          CCACTTTATTTTTACG      T -----  GATTA AACATTTTTATGTTCAAATTGTATCTATATTATCATTGTGTTA
   ATAT  AGGGTTAAATAAG TTTT  TCCTTATAAATATA CAAA    TGATTTTAGTCCTTAAAAAAT AAA TGA ATGTTTTCATCCTCACAAATTTTTTT  TTTTGTTTTTG TCCTTAATGA                TGAATG C     AA     T                                           
   ||||  ||||||||||||| ||||  |||||||||||||| ||||    ||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||  ||||||||||| ||||||||||                |||||| |     ||     |                                            
   TATA  TCCCAATTTATTC AAAA  AGGAATATTTATAT GTTT    ATTAAAATCAGGGATTTTTTA TTT ACT TACAAAAGTAGGAGTGTTTAAAAAAA  AAAATAAAAAC AGGGATTACT                TGTATA A     GT     A                                           
ATT    -T             T    AC              A    TTAA                     T   T   C                          -C           C          -----TATATTAAAAC      - AAACT  ----- AAATCTTGTATTATACTTATATACTTCCAACTTGTGTTATTTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End