SE2020423

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5625
  • Medicago truncatula
  • SE2020423
  • Mutator
  • M8
  • MtChr2:10235382-10235900
  • TTTTTTAAA
  • AAAGGGTTAAATATGTTTTTGGTCCCTATAAATATGTCAACTTTTTGTTTTAGTCCCTCTAAAATTTTCCTTCAACTTTTAGTCCCTATAAAGTTTTCAATCTTCACTTTTGGTCCCTCTTTTAAAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTTT                                                                                                      TTC             CT    A   --------AAACTCAT     GAATTCATATTATTTAATAAAATTTTCCAGAAAAATTCAAAATATTATAAGAATCACTCCAAAAAAAATTCAGAATTTTTTAACAAAACATGAATTTAATATGAATTTT
      AAAGGGTTAAATATGTTTTTGGTCCCTATAAATATGTCAACTTTTTGTTTTAGTCCCTCTAAAATTTTCCTTCAACTTTTAGTCCCTATAAAGTTTTCAATC   ACTTTTGGTCCCT  TTTA AGT                ATGTG                                                                                                             
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||  |||| |||                |||||                                                                                                              
      TTTCCCAATTTATACAAAAACCAGGGATATTTATACAGTTGAAAAGCAAAATCAGGGAGATTTTAAAAGGAAGTTGAAAATCAGGGATATTTTAAAAGTTAG   TGAAAACCAGGGA  AAAT TTA                AAATT                                                                                                             
AAATTT                                                                                                      TGA             -T    A   AATTAAAAACATAAAA     ACTTTAACACGTCTTTATACAGTTTATAAGATTTTTGTTAAGGATTTTTTTAAATCTAAAAAAATTGTTTTGTGTTTAATTTATACTTAAAAATTGGTATTTGTTATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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