SE2020428

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5630
  • Medicago truncatula
  • SE2020428
  • Mutator
  • M110
  • MtChr7:26966049-26966348
  • ATACATTTT
  • TGAGAATTGTTGTTGACAGATTGCATAAGGCTGTGTCACACTAGTAATTTACCGAAATGCCCCCTCGGCAGTTAACTCCTGAATTATGGAACCGGCTGTAGTTAACTCCCGAGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATACATTT                  G  -     AA                                   C             C    A                                --   CTGAAAACTTCGGCAGTTAACTG
        TGAGAATTGTTGTTGACA AT TGCAT  GGCTGTGTCACACTAGTAATTTACCGAAATGCCCC TCGGCAGTTAACT CTGA TTATGGAACCGGCTGTAGTTAACTCCCGAGGA  AAA                       
        |||||||||||||||||| || |||||  ||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||  |||                       C
        ACTCTTAACAACAACTGT TA ACGTA  CCGACACAGTGTGATCATTAAATGGCTTTATGGGG AGCCGTCAATTGA GGCT AATACCTTGGCCGACGTCAATTGAGGGCTCCT  TGA                       
TTTTACAT                  G  T     -A                                   -             C    C                                TT   AGCTGTCATTTGACTTTTGAAGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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