SE2020432

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5634
  • Medicago truncatula
  • SE2020432
  • Mutator
  • M8
  • MtChr4:17028381-17028887
  • TCTCAAAAA
  • AGGGTTAAATATATTTTTGGTCCCTATAAATATACCAACTTTTCGTTTTAGTCCCTCTAAAAAATTTCTTCAACTTTTAGTCCCTATAAAATTTTCAATCACTACTTTTGATCCCTATTTTTAAGT

Secondary structure and sequence

TSD    TIR
5'



3'
TCTCAAAA            A                     C        C            C     AA                     AT         A   AC        A   ---   TT    A  TTACTTTA        T     A   G      TAT  GTAGA       -    AT     - -     C  A               T      A                 AACCATCA
        AGGGTTAAATAT TTTTTGGTCCCTATAAATATA CAACTTTT GTTTTAGTCCCT TAAAA  TTTCTTCAACTTTTAGTCCCT  AAAATTTTC ATC  TACTTTTG TCC   CTA  TTTA GT        GTATTTTT AATGA ATT TGCAGA   GT     ATAATGT AAAA  ATTTC C CAAAA AA TTAGAATTTTTTAAC AAACAT AATTTAATATGAATTTT        
        |||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| |||||  |||||||||||||||||||||  ||||||||| |||  |||||||| |||   |||  |||| ||        |||||||| ||||| ||| ||||||   ||     ||||||| ||||  ||||| | ||||| || ||||||||||||||| |||||| |||||||||||||||||         
        TCCCAATTTATA AAAAACCAGGGATATTTATAT GTTGGAAA CAAAATCAGGGA ATTTT  AAGGAAGTTGAAAATCAGGGA  TTTTAAAAG TAG  GTGAAAAC AGG   GAT  GAGT CA        TATAAAAA TTATT TAA ATGTCT   TA     TATTATA TTTT  TAGAG G GTTTT TT AATCTTAAAAAATTG TTTGTA TTAAATTATACTTAAAA        
AAAAACTC            C                     A        A            T     AA                     GT         G   AA        C   TAG   -T    A  -TCTTAAG        C     C   A      TTT  ---AG       A    CT     A A     T  A               T      C                 ATATAAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End