SE2020438

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5640
  • Medicago truncatula
  • SE2020438
  • Mutator
  • M28
  • MtChr5:18806831-18807204
  • AAGTTAAAA
  • GGCTTAATTGCACTTTTCCCCCCTATCTTTTGTTAATTGTGCGATTTTGCACCCCCTCTTTTTTTTGAGCGATTTTGCACCCCATCTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAGTTAAAA                                                       C          -                        G   --  TGTGTTTTGTTCAAAATCATCATTAAAAGAGAGGAAAAGGGGCTAAAGATAGGGTGTAAAATCGCTCAAAAAAAAGAAGAG
         GGCTTAATTGCACTTTTCCCCCCTATCTTTTGTTAATTGTGCGATTTTGCACCCC TCTTTTTTTT GAGCGATTTTGCACCCCATCTTTT TCA  AT                                                                                 
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||  ||                                                                                  
         CCGAATTAACGTGAAAAGGGGGGATAGAAAACGATTAACACGCTAAAACGTGGGG AGAAAAAAAA CTCGCTAAAACGTGGGGTAGAAAA ACG  GG                                                                                 
AAAATTGAA                                                       T          A                        -   GG  AAAGACTAAAACGTGGGGTAGAAACACAAGTTAACGTGAAAACGGGGAATAGAAAAACGATTAACACGCTAAAACGTGGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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