Plant MITE

SE2030452

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5654
Medicago truncatula
SE2030452
hAT
Hat2
MtChr7:4610768-4610956
GTTATGAG
TTATGAGCTATGAAGCAC

Secondary structure and sequence

TSD TIR

5'

3'

G      G             ATA    -   GGACACCGGACACGACACGGACACTGACACAGCTGATAATTTGAAAAAATCACATAATTCAGTA
 TTATGA CTATGAAGCACGG   CGGA CAC                                                                
 |||||| |||||||||||||   |||| |||                                                                T
 AGTATT GATACTTCGTGCC   TGTG GGA                                                                
G      G             ---    A   ACCTAATCCGCACAGGGCCACAGCCTGTGCACAACACAGGCTGTGCTGTGGCTGTGAACATTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030452

GTTATGAGCTATGAAGCACGGATACGGACACGGACACCGGACACGACACGGACACTGACACAGCTGATAATTTGAAAAAATCACATAATTCAGTATAATTACAAGTGTCGGTGTCGTGTCGGACACAACACGTGTCCGACACCGGGACACGCCTAATCCAAGGAGTGTCCGTGCTTCATAGGTTATGAG

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