SE2020458

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5660
  • Medicago truncatula
  • SE2020458
  • Mutator
  • M8
  • MtChr1:32398314-32398828
  • TTATTTTTG
  • GGGTTAAATATGATTTTGGTCCCTATAAATATACTAACTTTTCGTTTTAGTCCCTCTAAAATTTTCCTTCAACTTTTAGTCCCTATAAAATTTTCAATCTTTACTTTTGGTCCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
  TTATTTTT            A                           T                                        C                 T               -------C     AAATAAACTCATATGTAGAATTCATATTTTCAAATAAAATTTTGCAGAAAAATTTATAATATTACAAGGATCTCTCCCAAAAAAGTTTAGAATTTTTTACCAAAACATGAATTAAATATGAATT
          GGGTTAAATATG TTTTGGTCCCTATAAATATACTAACTT TCGTTTTAGTCCCTCTAAAATTTTCCTTCAACTTTTAGTC CTATAAAATTTTCAATC TTACTTTTGGTCCCT        GTTTA                                                                                                                            
          |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||        |||||                                                                                                                             
          CCCAATTTATAC AAAACCAGGGATATTTATATGGTTGAA AGCAAAATCAGGGAGATTTTAAAAGGAAGTTGAAAATCAG GATATTTTAAAAGTTAG GATGAAAACCAGGGA        CATTT                                                                                                                            
GTTTTTATTT            A                           C                                        A                 C               TAAAAATT     AAAAGTATAAAAATTAATTTAACACGTCTTTACATACTTTATAACATTTTTAGTGAGGTTTTTTTTATCTTAAAAAATTGTTTTGTACTTAATTTATACTTAAAAAATGGCGGTTTTTATATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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