Plant MITE

SE2020468

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5670
Medicago truncatula
SE2020468
Mutator
M112
MtChr2:20968901-20969183
TTGTATTTT
GTATTTTGGGTTAAGTATGTTTTTAGTCCCTACAAAATCACAAATTTTTAAGTTTAATCCCT

Secondary structure and sequence

TSD TIR

5'

3'

 TT    TTT       G        T     C        C    A         T     C  ---T     TTTTAATAGTAATTTTAGTTCTCCATAATATTGTAATTTGTAAGAATAGTCCCAATTTTGAAAACTTTTT
   GTAT   GGGTTAA TATGTTTT AGTCC TACAAAAT ACAA TTTTTAAGT TAATC CT    TAAAA                                                                      
   ||||   ||||||| |||||||| ||||| |||||||| |||| ||||||||| ||||| ||    |||||                                                                      T
   TATG   CCCAATT ATACAAAA TCAGG ATGTTTTA TGTT GAAAATTCA ATTAG GA    TTTTA                                                                      
TTT    -TT       A        T     -        A    C         T     A  TGTT     AATAAGTAAAAATTAGGGTTAAACGTAAAATATCCCTGATAAAACCTCCTAATGTTCACAGGTAAAAAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020468

TTGTATTTTGGGTTAAGTATGTTTTTAGTCCCTACAAAATCACAAATTTTTAAGTTTAATCCCTTTAAAATTTTAATAGTAATTTTAGTTCTCCATAATATTGTAATTTGTAAGAATAGTCCCAATTTTGAAAACTTTTTTTAAAAAATGGACACTTGTAATCCTCCAAAATAGTCCCTATAAAATGCAAATTGGGATTAAAAATGAATAAATTTTTTGTAGAGATTATACTTAAAAGCTTGTAATTTTGTAGGACTTAAAACATAATTAACCCTTGTATTTT

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