Plant MITE

SE2050475

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5677
Medicago truncatula
SE2050475
PIF/harbinger
To16
MtChr6:20562240-20562566
TAA
GGTGCGTTTGATTTGCTAAAAAATG

Secondary structure and sequence

TSD TIR

5'

3'

TAAG    C     A     TAA      -AAG      ACAGAACAACTCTAGTTGTCACTTGTTTGATTTGTAAAACTGTTTCAGGTACATGACAAACTGGAGGCAAGTGACATGACAAAAACTCATATTTTTGTCTCTCACCAAATCACAGCACAACTTTTTGT
    GGTG GTTTG TTTGC   AAAATG    GACAAG                                                                                                                                
    |||| ||||| |||||   ||||||    ||||||                                                                                                                                C
    CCAC CAAAC AAACG   TTTTGC    CATGAC                                                                                                                                
        C     C     ---      CATT      CTGTCTTGTCATGTTGTATTCTGTCTTGTCGTGTCCTGTTTAAAAAATACCGTAACTCATTAAAAAACAAAATATGCTAAAAACTCCCTGTTTTACGATAAAACCATAAAATCTGATGAACATGCACC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2050475

TAAGGGTGCGTTTGATTTGCTAAAAAATGAAGGACAAGACAGAACAACTCTAGTTGTCACTTGTTTGATTTGTAAAACTGTTTCAGGTACATGACAAACTGGAGGCAAGTGACATGACAAAAACTCATATTTTTGTCTCTCACCAAATCACAGCACAACTTTTTGTCCCACGTACAAGTAGTCTAAAATACCAAAATAGCATTTTGTCCCTCAAAAATCGTATAAAACAAAAAATTACTCAATGCCATAAAAAATTTGTCCTGTGCTGTTCTGTCTTATGTTGTACTGTTCTGTCCAGTACTTACCGTTTTGCAAACCAAACCCACC

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