Plant MITE

SE2020478

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5680
Medicago truncatula
SE2020478
Mutator
M8
MtChr6:5162164-5162405
TATAATCAA
AGGTTAATTAAGTAAATGGTCCTTATAAATATTTAGAATTTTGTTTTTAGTCCTTATAAAATAAAATCACACTTTTTAGTCCCTATAAAAATTTTC

Secondary structure and sequence

TSD TIR

5'

3'

TATAATCAA   -          AAA    CC             G A                                              A   AA      AATC  C     TAGT
         AGG TTAATTAAGT   TGGT  TTATAAATATTTA A TTTTGTTTTTAGTCCTTATAAAATAAAATCACACTTTTTAGTCCCT TAA  ATTTTC    AG ATTTT    
         ||| ||||||||||   ||||  ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||    || |||||     
         TCC AATTAATTTA   ATCA  GATATTTATAAGT T AAAACAAAAATCAGGGATATTTTATTTTAGTGTGAAAAATCAGGGA ATT  TAAAAG    TC TAAAA    
TAACTAATA   T          AAA    AA             G C                                              C   -G      GAAT  A     TCCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020478

TATAATCAAAGGTTAATTAAGTAAATGGTCCTTATAAATATTTAGAATTTTGTTTTTAGTCCTTATAAAATAAAATCACACTTTTTAGTCCCTATAAAAATTTTCAATCAGCATTTTTAGTCCCTAAAATACTTAAGGAAAATGTTACAGGGACTAAAAAGTGTGATTTTATTTTATAGGGACTAAAAACAAAACTGTGAATATTTATAGAAACTAAAAATTTAATTAATCCTATAATCAAT

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