SE2020480

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5682
  • Medicago truncatula
  • SE2020480
  • Mutator
  • M114
  • MtChr5:37795576-37795819
  • TTACAATTG
  • CAATTGGAAAATTGCTCTTCTCCCAACAAAAAACGCTCACTCACATACAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTA      ---                    C    A   C      A       ATTAA      C       G   A                 -----A    TTAAACCAACGTGACTTAAGTGA
   CAATTG   GAAAATTGCTCTTCTCCCAA AAAA ACG TCACTC CATACAA     ACTGAC AAAATAC CCC CGTGAGTTAACTTACGT      GGTT                       
   ||||||   |||||||||||||||||||| |||| ||| |||||| |||||||     |||||| ||||||| ||| |||||||||||||||||      ||||                       C
   GTTAAC   CTTTTAACGAGAAGAGGGTT TTTT TGC AGTGAG GTATGTT     TGACTG TTTTATG GGG GCACTCAATTGAGTGCG      TATT                       
         ATT                    -    C   A      G       -----      A       A   C                 ACTCAA    GGACGCACTCAACCTATAACTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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