Plant MITE

SE2020481

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5683
Medicago truncatula
SE2020481
Mutator
M11
MtChr3:24809161-24809352
TAAACTTAA
AGGGAAATGTTAACGAGTGCTTCCGGAGCACTCTTTAAG

Secondary structure and sequence

TSD TIR

5'

3'

TAAACTTA    AAA                  GA            --A  TATATGTAAAAAGTATTTATAAAAATACATGTAATTAATGCATTG
        AGGG   TGTTAACGAGTGCTTCCG  GCACTCTTTAAG   AC                                             
        ||||   ||||||||||||||||||  ||||||||||||   ||                                              
        TCCC   ACAATTGCTCACGGGGGC  TGTGAGAAATTC   TG                                             
AATTCAAA    AAA                  AC            ATA  ATTTTATTAATTAATAAGAAATTTGTTCAATTTGTAAAATTAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020481

TAAACTTAAGGGAAATGTTAACGAGTGCTTCCGGAGCACTCTTTAAGAACTATATGTAAAAAGTATTTATAAAAATACATGTAATTAATGCATTGAAAATTAAAATGTTTAACTTGTTTAAAGAATAATTAATTATTTTAGTATACTTAAAGAGTGTCACGGGGGCACTCGTTAACAAAACCCTAAACTTAA

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